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1

Common principles and best practices for engineering microbiomes

Lawson, Christopher E., Harcombe, William R., Hatzenpichler, Roland, Lindemann, Stephen R., Löffler, Frank E., O’Malley, Michelle A., García Martín, Héctor, Pfleger, Brian F., Raskin, Lutgarde, Ventur

Journal:

Nature Reviews Microbiology

Year:

2019

Language:

english

File:

PDF, 2.46 MB

english, 2019

2

Next-generation physiology approaches to study microbiome function at single cell level

Hatzenpichler, Roland, Krukenberg, Viola, Spietz, Rachel L., Jay, Zackary J.

Journal:

Nature Reviews Microbiology

Year:

2020

File:

PDF, 2.61 MB

2020

3

Methyloprofundus sedimenti gen. nov., sp. nov., an obligate methanotroph from ocean sediment belonging to the 'deep sea-1' clade of marine methanotrophs

Tavormina, P. L., Hatzenpichler, R., McGlynn, S., Chadwick, G., Dawson, K. S., Connon, S. A., Orphan, V. J.

Journal:

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Year:

2015

Language:

english

File:

PDF, 982 KB

english, 2015

4

[Springer Protocols Handbooks] || Detection of Protein-Synthesizing Microorganisms in the Environment via Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT)

Hatzenpichler, Roland

Year:

2015

Language:

english

File:

PDF, 236 KB

english, 2015

5

Occurrence and expression of novel methyl-coenzyme M reductase gene (mcrA) variants in hot spring sediments

McKay, Luke J., Hatzenpichler, Roland, Inskeep, William P., Fields, Matthew W.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.07 MB

english, 2017

6

Roadmap for naming uncultivated Archaea and Bacteria

Murray, Alison E., Freudenstein, John, Gribaldo, Simonetta, Hatzenpichler, Roland, Hugenholtz, Philip, KÃ¤mpfer, Peter, Konstantinidis, Konstantinos T., Lane, Christopher E., Papke, R. Thane, Parks, D

Journal:

Nature Microbiology

Year:

2020

File:

PDF, 1.14 MB

2020

7

Multicellular photo-magnetotactic bacteria

Orr H. Shapiro, Roland Hatzenpichler, Daniel H. Buckley, Stephen H. Zinder, Victoria J. Orphan

Journal:

Environmental Microbiology Reports

Year:

2011

Language:

english

File:

PDF, 255 KB

english, 2011

8

Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa

Ma, L., Kim, J., Hatzenpichler, R., Karymov, M. A., Hubert, N., Hanan, I. M., Chang, E. B., Ismagilov, R. F.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

9

In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry

Hatzenpichler, Roland, Scheller, Silvan, Tavormina, Patricia L., Babin, Brett M., Tirrell, David A., Orphan, Victoria J.

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

10

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

Hatzenpichler, R.

Journal:

Applied and Environmental Microbiology

Year:

2012

Language:

english

File:

PDF, 434 KB

english, 2012

11

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

Hatzenpichler, R., Lebedeva, E. V., Spieck, E., Stoecker, K., Richter, A., Daims, H., Wagner, M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2008

Language:

english

File:

PDF, 2.07 MB

english, 2008

12

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

Anja Spang, Roland Hatzenpichler, Céline Brochier-Armanet, Thomas Rattei, Patrick Tischler, Eva Spieck, Wolfgang Streit, David A. Stahl, Michael Wagner, Christa Schleper

Journal:

Trends in Microbiology

Year:

2010

Language:

english

File:

PDF, 1.32 MB

english, 2010

13

Activity-based cell sorting reveals responses of uncultured archaea and bacteria to substrate amendment

Reichart, Nicholas J., Jay, Zackary J., Krukenberg, Viola, Parker, Albert E., Spietz, Rachel L., Hatzenpichler, Roland

Journal:

The ISME Journal

Year:

2020

File:

PDF, 1.99 MB

2020

14

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

Murray, Alison E., Freudenstein, John, Gribaldo, Simonetta, Hatzenpichler, Roland, Hugenholtz, Philip, KÃ¤mpfer, Peter, Konstantinidis, Konstantinos T., Lane, Christopher E., Papke, R. Thane, Parks, D

Journal:

Nature Microbiology

Year:

2020

File:

PDF, 753 KB

2020

15

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

Marc Mußmann, Ivana Brito, Angela Pitcher, Jaap S. Sinninghe Damsté, Roland Hatzenpichler, Andreas Richter, Jeppe L. Nielsen, Per Halkjær Nielsen, Anneliese Müller, Holger Daims, Michael Wagner and Ia

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.27 MB

english, 2011

16

Enrichment and Genome Sequence of the Group I.1a Ammonia-Oxidizing Archaeon “Ca. Nitrosotenuis uzonensis” Representing a Clade Globally Distributed in Thermal Habitats

Lebedeva, Elena V., Hatzenpichler, Roland, Pelletier, Eric, Schuster, Nathalie, Hauzmayer, Sandra, Bulaev, Aleksandr, Grigor’eva, Nadezhda V., Galushko, Alexander, Schmid, Markus, Palatinszky, Marton,

Journal:

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

17

Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis

Steward, Katherine F., Eilers, Brian, Tripet, Brian, Fuchs, Amanda, Dorle, Michael, Rawle, Rachel, Soriano, Berliza, Balasubramanian, Narayanaganesh, CopiÃ©, ValÃ©rie, Bothner, Brian, Hatzenpichler, R

Journal:

Frontiers in Microbiology

Year:

2020

File:

PDF, 4.18 MB

2020

18

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

Mussmann, M., Brito, I., Pitcher, A., Sinninghe Damste, J. S., Hatzenpichler, R., Richter, A., Nielsen, J. L., Nielsen, P. H., Muller, A., Daims, H., Wagner, M., Head, I. M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 314 KB

english, 2011

19

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia

Hatzenpichler, Roland, Connon, Stephanie A., Goudeau, Danielle, Malmstrom, Rex R., Woyke, Tanja, Orphan, Victoria J.

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.56 MB

english, 2016

20

Characterization of Chemosynthetic Microbial Mats Associated with Intertidal Hydrothermal Sulfur Vents in White Point, San Pedro, CA, USA

Miranda, Priscilla J., McLain, Nathan K., Hatzenpichler, Roland, Orphan, Victoria J., Dillon, Jesse G.

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 6.57 MB

english, 2016

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